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JMLR W&CP: Volume 8: Machine Learning in Systems Biology

JMLR Workshop and Conference Proceedings
Volume 8: Machine Learning in Systems Biology

       

Proceedings of the third International Workshop on Machine Learning in Systems Biology
September 5-6, 2009, Ljubljana, Slovenia


Editors: Sašo Džeroski, Pierre Geurts, Juho Rousu

Preface
Sašo Džeroski, Pierre Geurts, Juho Rousu; 8:1-2, 2010.
[abs] [pdf]

A comparison of AUC estimators in small-sample studies
Antti Airola, Tapio Pahikkala, Willem Waegeman, Bernard De Baets, Tapio Salakoski; 8:3-13, 2010.
[abs] [pdf]

Hierarchical Cost-Sensitive Algorithms for Genome-Wide Gene Function Prediction
Nicolò Cesa-Bianchi, Giorgio Valentini; 8:14-29, 2010.
[abs] [pdf]

Evaluation of a Bayesian model-based approach in GA studies
Gábor Hullám, Péter Antal, Csaba Szalai, András Falus; 8:30-43, 2010.
[abs] [pdf]

Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data
Zerrin Isik, Volkan Atalay, Rengul Cetin-Atalay; 8:44-54, 2010.
[abs] [pdf]

On utility of gene set signatures in gene expression-based cancer class prediction
Minca Mramor, Marko Toplak, Gregor Leban, Tomaž Curk, Janez Demšar, Blaž Zupan; 8:55-64, 2010.
[abs] [pdf]

Accuracy-Rejection Curves (ARCs) for Comparing Classification Methods with a Reject Option
Malik Sajjad Ahmed Nadeem, Jean-Daniel Zucker, Blaise Hanczar; 8:65-81, 2010.
[abs] [pdf]

Predicting the functions of proteins in Protein-Protein Interaction networks from global information
Hossein Rahmani, Hendrik Blockeel, Andreas Bender; 8:82-97, 2010.
[abs] [pdf]

Simple ensemble methods are competitive with state-of-the-art data integration methods for gene function prediction
Matteo Ré, Giorgio Valentini; 8:98-111, 2010.
[abs] [pdf]

Event based text mining for integrated network construction
Yvan Saeys, Sofie Van Landeghem, Yves Van de Peer; 8:112-121, 2010.
[abs] [pdf]

Evaluation Method for Feature Rankings and their Aggregations for Biomarker Discovery
Ivica Slavkov, Bernard Ženko, Sašo Džeroski; 8:122-135, 2010.
[abs] [pdf]

A Subgroup Discovery Approach for Relating Chemical Structure and Phenotype Data in Chemical Genomics
Lan Umek, Petra Kaferle, Mojca Mattiazzi, Aleš Erjavec, Črtomir Gorup, Tomaž Curk, Uroš Petrovič, Blaž Zupan; 8:136-144, 2010.
[abs] [pdf]




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